Stem-loop bdi-MIR5049

Accession

MI0025331

Description

Brachypodium distachyon bdi-MIR5049 precursor miRNA

Literature search

1 open access papers mention bdi-MIR5049
(2 sentences)

Sequence

16849 reads, 123.0 reads per million, 21 experiments

gaaauucauguacuccuUCCGACCCAUAUUACUUGUcgcagauuuaauacagcuACAAGUAAUAUGGAUCGGAggaaguaugucuuuuu
.......(((((((.(((((((.(((((((((((((.((............)).))))))))))))).))))))).)))))))......

Structure

gaaauuc       c       C             c  agauu 
       auguacu cuUCCGA CCAUAUUACUUGU gc     u
       ||||||| ||||||| ||||||||||||| ||      
       uguauga ggAGGCU GGUAUAAUGAACA cg     a
-uuuuuc       a       A             u  acaua 

Annotation confidence Medium

Genome context

1: 9873496-9873584 [-]

Mature bdi-miR5049-5p

• Accession: MIMAT0030162
• Description: Brachypodium distachyon bdi-miR5049-5p mature miRNA
• Sequence: 18 - UCCGACCCAUAUUACUUGU - 36
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5049-3p

• Accession: MIMAT0030163
• Description: Brachypodium distachyon bdi-miR5049-3p mature miRNA
• Sequence: 55 - ACAAGUAAUAUGGAUCGGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443