Stem-loop bdi-MIR7721

Accession

MI0025333

Description

Brachypodium distachyon bdi-MIR7721 precursor miRNA

Sequence

743 reads, 5.0 reads per million, 19 experiments

auaaggccagcACGGGAUUUUAUAACGGACUUUGGCgaaacauuacuugguaauacgauguuauugcgacacaaaagagauaucguuguauuuauauuggaaaacucaauaaauaguauaacauuuauauaccuacauuuuuuguauaauuguucgUCAAAGUUUGGCAUAGAAUUCaaugcaggucuuaua
((((((((.(((..(((((((((..((((((((((((((.((.........(((((((((.((((.(.........).)))).)))))))))..((((((.....))))))....(((((.......))))).((((.....))))....))))))))))))))))..)))))))))..))).)))))))).

Structure

-        a   CG         AA              a  -------------------------------------------------uuacuuggu         u    g gac 
 auaaggcc gcA  GGAUUUUAU  CGGACUUUGGCgaa ca                                                          aauacgaug uauu c   a
 |||||||| |||  |||||||||  |||||||||||||| ||                                                          ||||||||| |||| |   c
 uauucugg cgu  CUUAAGAUA  GUUUGAAACUgcuu gu                                                          uuauguugc auag g   a
a        a   aa         CG              -  uaauauguuuuuuacauccauauauuuacaauaugauaaauaacucaaaagguuauau         u    a aaa 

Annotation confidence Medium

Genome context

4: 34312043-34312234 [-]

Mature bdi-miR7721-5p

• Accession: MIMAT0030166
• Description: Brachypodium distachyon bdi-miR7721-5p mature miRNA
• Sequence: 12 - ACGGGAUUUUAUAACGGACUUUGGC - 36
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7721-3p

• Accession: MIMAT0030167
• Description: Brachypodium distachyon bdi-miR7721-3p mature miRNA
• Sequence: 157 - UCAAAGUUUGGCAUAGAAUUC - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443