Stem-loop bdi-MIR7723a

Accession

MI0025336

Description

Brachypodium distachyon bdi-MIR7723a precursor miRNA

Sequence

aaaguucaauuuUGAAACAACUAUCUUGGCCUUCUCuucugucugcuagaccaacacauugaucuccuauugguaaccccaacaauccuucaucuguauaugcaauuauacgauagcuaguuuuuugguuauuugccuauauaauugaaagaauguuggggcugccgaugaaaucagucuguagguccagccaucacacaaGAGGGCCAAGGUAGUUGUUUCACAguugcaccuu
...((.(((((.(((((((((((((((((((((((....((...(((.((((.(((.((((((.((..(((((((.((((((((.((.((((..((((((.(((.......(((((((((....)))))))))))).))))))..)))).)).)))))))).))))))))).)))))).))).)))).)))...))....))))))))))))))))))))))).))))).))...

Structure

aaa  u     u                       Cuuc  ucu   a    a   c      c  cu       a        a  c    uc      u   auuauac         u 
   gu caauu UGAAACAACUAUCUUGGCCUUCU    ug   gcu gacc aca auugau uc  auuggua ccccaaca uc uuca  uguaua gca       gauagcuag u
   || ||||| |||||||||||||||||||||||    ||   ||| |||| ||| |||||| ||  ||||||| |||||||| || ||||  |||||| |||       |||||||||  
   ca guugA ACUUUGUUGAUGGAACCGGGAGa    ac   cga cugg ugu ugacua ag  uagccgu gggguugu ag aagu  auauau cgu       uuauugguu u
uuc  c     C                       acac  uac   c    a   c      a  --       c        a  a    ua      c   -------         u 

Annotation confidence Not enough data

Genome context

1: 55108461-55108695 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7723a

Mature bdi-miR7723a-5p

• Accession: MIMAT0030172
• Description: Brachypodium distachyon bdi-miR7723a-5p mature miRNA
• Sequence: 13 - UGAAACAACUAUCUUGGCCUUCUC - 36
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7723a-3p

• Accession: MIMAT0030173
• Description: Brachypodium distachyon bdi-miR7723a-3p mature miRNA
• Sequence: 202 - GAGGGCCAAGGUAGUUGUUUCACA - 225
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443