miRBase entry: bdi-MIR7725b

Stem-loop bdi-MIR7725b


Accession
MI0025340
Description
Brachypodium distachyon bdi-MIR7725b precursor miRNA


Sequence

506 reads, 7.0 reads per million, 20 experiments
aucUUGGCGAACUAGGGAGAUGGUUUucgcuaugcuccaccucauauuugacugaaauagaauuuuguucuuccaugauguaauuuagucaaauaagaggagacgagacauagugaaAACCAUAUUCCUAGCUCGCCAUGGcagg
.((.((((((.(((((((.((((((((((((((((((..((((.((((((((((((.((..(((.((......)).))).)).)))))))))))).))))....))).))))))))))))))).))))))).)))))).))....

Structure
---a  U      A       G               -   --ca    a            a  ga   u  uu 
    uc UGGCGA CUAGGGA AUGGUUUucgcuaug cuc    ccuc uauuugacugaa ua  auu ug  c
    || |||||| ||||||| ||||||||||||||| |||    |||| |||||||||||| ||  ||| ||   
    GG ACCGCU GAUCCUU UACCAAaagugauac gag    ggag auaaacugauuu au  uag ac  u
ggac  U      C       A               a   caga    a            a  -g   u  cu 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
1: 9582818-9582962 [+]

Database links

Mature bdi-miR7725b-5p

Accession MIMAT0030180
Description Brachypodium distachyon bdi-miR7725b-5p mature miRNA
Sequence 4 - UUGGCGAACUAGGGAGAUGGUUU - 26
Evidence experimental
Illumina [1]

Mature bdi-miR7725b-3p

Accession MIMAT0030183
Description Brachypodium distachyon bdi-miR7725b-3p mature miRNA
Sequence 118 - AACCAUAUUCCUAGCUCGCCAUGG - 141
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443