Stem-loop bdi-MIR7733

Accession

MI0025349

Description

Brachypodium distachyon bdi-MIR7733 precursor miRNA

Sequence

uguuucaggcUUCUCGCCAUUGCCAAACCAGGGCaagcagaagcgcaaacggacgucuaacucacugcagcagcaagcuccaucaaugccucccccgugcucgcaucucccgcgacauauaugguuuauguguaccauuuuuccgaugccgcagacgaugauacugccuugucuaauggugcccaacaaccuuggucaguggucgguucgacgaugauuggaugaccaaggaugucgggagccaucgaucgagauggcaucaucauuugcggcauaagaaaaugguacauaugaaccauaccuguauaagggagaugcaggcaugggaggaggcgaugacagagcuuucugcugccgugacuuagacguccguuugcgcuucugcuugcCCUGCGUUGGCGAAGGCGAGAAGCaugaaucagac
((.((((.((((((((((.(((((((..((((((((((((((((((((((((((((((((.((((.(((((((.((((((..(((.(((((((((((((((.(((((((((...(((..(((((((((((((((((((((((...((((((((((.((((((.(((.((((((..(((((.(((.(((.(((((((((((.((((......)))).))....))))))))).))).))).))))).)).)))).))).)))))).))))))))))..)))))))))))))))))))))))..)))....))))))))).)))))))).))))))).)))..)))))).))))))).)))).))))))))))))))))))))))))))))))))..))))))).)))))))))).)))).))...

Structure

---  u    g          A       AC                                c    u       c      ca   a       -        c         -gcg   ua                       ccg          c      a   c    -  ua     g   a   a         ----  g    gu 
   ug uuca gcUUCUCGCC UUGCCAA  CAGGGCaagcagaagcgcaaacggacgucuaa ucac gcagcag aagcuc  uca ugccucc cccgugcu gcaucuccc    aca  uaugguuuauguguaccauuuuu   augccgcaga gaugau cug cuug uc  auggu ccc aca ccuugguca    gu gucg  u
   || |||| |||||||||| |||||||  |||||||||||||||||||||||||||||||| |||| ||||||| ||||||  ||| ||||||| |||||||| |||||||||    |||  |||||||||||||||||||||||   |||||||||| |||||| ||| |||| ||  ||||| ||| ||| |||||||||    || ||||   
   ac aagu CGAAGAGCGG AGCGGUU  GUCCcguucgucuucgcguuugccugcagauu agug cgucguc uucgag  agu gcggagg ggguacgg cguagaggg    ugu  auaccaaguauacaugguaaaag   uacggcguuu cuacua ggu gagc ag  uaccg ggg ugu ggaaccagu    ua uagc  c
cag  u    a          A       GC                                c    c       u      ac   a       a        a         aaua   cc                       -aa          a      c   a    u  -c     a   c   a         aggu  g    ag 

Annotation confidence Not enough data

Genome context

1: 38847604-38848027 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7733

Mature bdi-miR7733-5p

• Accession: MIMAT0030200
• Description: Brachypodium distachyon bdi-miR7733-5p mature miRNA
• Sequence: 11 - UUCUCGCCAUUGCCAAACCAGGGC - 34
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7733-3p

• Accession: MIMAT0030201
• Description: Brachypodium distachyon bdi-miR7733-3p mature miRNA
• Sequence: 390 - CCUGCGUUGGCGAAGGCGAGAAGC - 413
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443