Stem-loop bdi-MIR7717c

Accession

MI0025351

Description

Brachypodium distachyon bdi-MIR7717c precursor miRNA

Sequence

3326 reads, 23.0 reads per million, 21 experiments

uuuggcgguuuugcuauuucUUGGGCGACUGAGAAAUAACUAUUucuuagucaaugauuacaaccuuuugauucaaucaucgagauuguaggucugauggauaagaaagauuuucAUUGGAUGACUACGAUUGUcgaucgagaaauaacuauuucuuaguugacugagaaauagacggucccaauuuuug
.((((.((..((((((((((((((.(((((((((((((..((((((((((((((.............)))))).....(((((((((((((((((((((((...........))))))))))..)))))))).))))).))))))))..))))))))))))).))))))))))).)))))))))......

Structure

-----u    c  uu   -           G             AC        agucaaugauuacaaccuuuugauucaauc     -        --          uaag 
      uugg gg  uug cuauuucUUGG CGACUGAGAAAUA  UAUUucuu                              aucga gauuguag  gucugaugga    a
      |||| ||  ||| ||||||||||| |||||||||||||  ||||||||                              ||||| ||||||||  ||||||||||    a
      aacc cu  ggc gauaaagaguc guugauucuuuau  auaaagag                              uagcU UUAGCAUC  UAGGUUAcuu    a
guuuuu    -  --   a           a             ca        -----------------------------c     G        AG          uuag 

Annotation confidence Medium

Genome context

3: 32702277-32702466 [+]

Mature bdi-miR7717c-5p

• Accession: MIMAT0030204
• Description: Brachypodium distachyon bdi-miR7717c-5p mature miRNA
• Sequence: 21 - UUGGGCGACUGAGAAAUAACUAUU - 44
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7717c-3p

• Accession: MIMAT0030205
• Description: Brachypodium distachyon bdi-miR7717c-3p mature miRNA
• Sequence: 116 - AUUGGAUGACUACGAUUGU - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443