Stem-loop bdi-MIR7739

Accession

MI0025356

Description

Brachypodium distachyon bdi-MIR7739 precursor miRNA

Sequence

cugagguugggacAGAUGCGUCGAAGCGGACUGGAUCuaagacugcagcugggguuguugcggagcaaauugaaugggcuguugcugggguugagacgcccaggugccuugcggauugauccacugauuaugcggaaucuggccuggguaguagcuccacggagcgccuugguaguuguagccauaccccuggaaUUGAGUCUGAGAAGUAUUUCUGuagugucaggca
((((.(.....((((((((.((....((((((.((((((...........(((((.(((((((.((.........((((.(((.(((((((((....((((((((...((.((.((.((((....)))))).)).))....))))))))..)))))))).).)))))))..))..)))))))...)))))))).))).)))))).)).)))..)))))..).))))...

Structure

---    g uuggg     --   G  GAAG      G   -   agacugcagcu     --u       -a  aaauugaau    u   g -        agac        -gcc  g  g  u    c 
   cuga g     acAGA  UGC UC    CGGACU GAU Cua           ggggu   guugcgg  gc         gggc guu c ugggguug    gcccaggu    uu cg au gauc a
   |||| |     |||||  ||| ||    |||||| ||| |||           |||||   |||||||  ||         |||| ||| | ||||||||    ||||||||    || || || ||||  
   gacu u     uGUCU  AUG AG    GUCUGA UUa ggu           cccca   cgauguu  ug         uccg cga g accucgau    uggguccg    aa gc ua uuag c
acg    g ---ga     UU   A  ---A      G   a   -----------     uac       ga  -------gu    -   g c        --ga        gucu  g  g  -    u 

Annotation confidence Not enough data

Genome context

1: 41016724-41016952 [+]

Mature bdi-miR7739-5p

• Accession: MIMAT0030214
• Description: Brachypodium distachyon bdi-miR7739-5p mature miRNA
• Sequence: 14 - AGAUGCGUCGAAGCGGACUGGAUC - 37
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7739-3p

• Accession: MIMAT0030215
• Description: Brachypodium distachyon bdi-miR7739-3p mature miRNA
• Sequence: 196 - UUGAGUCUGAGAAGUAUUUCUG - 217
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443