Stem-loop bdi-MIR7744

Accession

MI0025362

Description

Brachypodium distachyon bdi-MIR7744 precursor miRNA

Literature search

0 open access papers mention bdi-MIR7744
(0 sentences)

Sequence

aucgugcgccuaAGGAUGGCAAGAUUUAUCGAUGGGugugguguuuaccuugacuccuccagaaaacgucaaggcgagaagaaaccaucuaguuggcacaagucaagucacgcgcucguguggucaaacaccgagucauucuagguccuaaccaaaccagccgguguuugaccacacaggcgucacuuugacucgugccaacuagaugguuucuuuccgccuugucauuucugcauaagauggccaucuucacgccCAUCGACAACUUUUGCCAUCCUUAggagcgcgac
.((((((.((((((((((((((((.((.(((((((((((((.(....((....((....((((((..(.(((((((.((((((((((((((((((((((.((((((((.((((.((.((((((((((((((((.((.......(((....)))......)))))))))))))))))))))))).)).)))))).)))))))))))))))))))))).))))))).).))))))....))..))....).))))))))))))).)).)))))))))))))))).)))))).

Structure

a      g                U  A             u uuua  uuga  ccuc      ac u       a                      a      -  c    g  c                a  cauucua   c 
 ucgugc ccuaAGGAUGGCAAGA UU UCGAUGGGugugg g    cc    cu    cagaaa  g caaggcg gaagaaaccaucuaguuggcac agucaa gu acgc cu guguggucaaacaccg gu       ggu c
 |||||| |||||||||||||||| || ||||||||||||| |    ||    ||    ||||||  | ||||||| |||||||||||||||||||||| |||||| || |||| || |||||||||||||||| ||       |||  
 agcgcg ggAUUCCUACCGUUUU AA AGCUACccgcacu c    gg    ga    gucuuu  c guuccgc uuucuuugguagaucaaccgug ucaguu ca ugcg ga cacaccaguuuguggc cg       cca u
c      a                C  C             u uacc  --ua  auac      -a u       c                      c      u  c    -  -                -  -accaaa   a 

Annotation confidence Not enough data

Genome context

1: 65104738-65105027 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7744

Mature bdi-miR7744-5p

• Accession: MIMAT0030228
• Description: Brachypodium distachyon bdi-miR7744-5p mature miRNA
• Sequence: 13 - AGGAUGGCAAGAUUUAUCGAUGGG - 36
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7744-3p

• Accession: MIMAT0030229
• Description: Brachypodium distachyon bdi-miR7744-3p mature miRNA
• Sequence: 257 - CAUCGACAACUUUUGCCAUCCUUA - 280
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443