Stem-loop bdi-MIR7752

Accession

MI0025370

Description

Brachypodium distachyon bdi-MIR7752 precursor miRNA

Sequence

11278 reads, 101.0 reads per million, 21 experiments

ccacuuuaugaaugcucuucccacugucauuuuccagacuuaugcugaccaaacaagccuugcugacuccaacaUUCGAAACACAUGGGAGCUCACUGauauugcuaauccaaguagucuuuuccgccucaugaagaaaauggcaugaccauaagacaugggauagcuggaucuacuuaacugguaguacuaguuaacacguccauauugacaugggaucuaccagagaagaaaauggcaugaccauaagaacgucuugcaagcgucauuguuucaugacacuugggggacucaugaggcacaauggaguacuuggauaggcgagaucaauaagcucccauguguuccgAAUGUUGGAGUCAAUAGGGGUUGcauaauuccggaaaaugauagguuggaagaacacgccuaaggugga
((((((((.(..((.((((((..((((((((((((.((.((((((.........((.(((((.(((((((((((((((.((((((((((((((...((((.(((((.(((((((((.(((.....(((((((((.....((((((((.((((..(((.((...(((((((..(((((.....)))))..))))))).)).)))..........(((......))).........)))))))).))))......(((((.((((.(((((......))))).)))).)))))))))))))).....))).))))))))).))))).))))...)))))))))))))).))))))))))))))).))))).)))))))).)).))))))))))))...)))))).))..).)))))))).

Structure

-        u aa  c      -ca            a  c      ugaccaaac  g     c               A              CAC    a     a         g   uuucc         ---------------------------------------agaaa    -    a    -----------------------------aa   a  gga       au     u 
 ccacuuua g  ug ucuucc   cugucauuuucc ga uuaugc         aa ccuug ugacuccaacaUUCG AACACAUGGGAGCU   UGau uugcu auccaagua ucu     gccucauga                                            augg caug ccau                               gac ug   uagcugg  cuacu a
 |||||||| |  || ||||||   |||||||||||| || ||||||         || ||||| ||||||||||||||| ||||||||||||||   |||| ||||| ||||||||| |||     |||||||||                                            |||| |||| ||||                               ||| ||   |||||||  ||||| a
 gguggaau c  ac agaagg   gauaguaaaagg cu aauacG         UU GGGAU ACUGAGGUUGUAAgc uuguguacccucga   acua agcgg uagguucau agg     cggaguacu                                            uacc guac ggua                               cug ac   auugauc  gaugg c
a        c gc  a      uug            c  u      ---------  G     A               c              aua    g     a         g   uaaca         caggggguucacaguacuuuguuacugcgaacguucugcaagaa    a    -    aaagaagagaccaucuaggguacaguuauac   c  --a       au     u 

Annotation confidence Low

Genome context

3: 3518192-3518609 [-]

Mature bdi-miR7752-5p

• Accession: MIMAT0030244
• Description: Brachypodium distachyon bdi-miR7752-5p mature miRNA
• Sequence: 75 - UUCGAAACACAUGGGAGCUCACUG - 98
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7752-3p

• Accession: MIMAT0030245
• Description: Brachypodium distachyon bdi-miR7752-3p mature miRNA
• Sequence: 350 - AAUGUUGGAGUCAAUAGGGGUUG - 372
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443