Stem-loop bdi-MIR7758

Accession

MI0025378

Description

Brachypodium distachyon bdi-MIR7758 precursor miRNA

Literature search

1 open access papers mention bdi-MIR7758
(1 sentences)

Sequence

3306 reads, 42.0 reads per million, 21 experiments

uugcacgggguacaaAUAUGCCACUACCGUUAGUUGACCguuaaguaaaagaugaaaaaacaauuuugccccuauguaauauguugauguuccauuuacaacaaauuacucauuuuagaaaacuuagcuuuucaagguuuuuaggaugcucauaauaccauuuccgaguaaguuucagcaauaaugauuguagcaugaaaaauuguaaaauuucaauagcacuucccugugauuuuaauuaacaucacaaaauucauaauagauucagcaaauuaauauacuaaaacucaucauaguuuguggagagagagagggggagaagagaccgagaggauauuuuaguucucuuguuucuuuuuguuuuuuuugaccuguggaccaggaguauuucggucaauauaaaauugacuuaacggucaacuAGCGGUCAACUAACUGUAGUGGCAUauuuguaccacaugucaa
..(((.(.(((((((((((((((((((.(((((((((((((((.((((((..((......)).))))))......(((((.(((((............))))).))))).((((((((((..(((........)))..))))))))))(((..............)))....(((((((.((((...)))).)).))))).((((........))))..........((((((.((....)).)))))).....................................(((.(((((...))))).)))((((((((.((((((((((.((((((((......)))))))))))))))))).))))))))....(((.((((.(((....))))))).))).....((((((....)))))).))))))))))))))).))))))))))))))))))).).)))...

Structure

-uu   c g                   C               aguaaaagaugaaaaaacaauuuugccccuauguaauauguugauguuccauuuacaacaaauuacucauuuuagaaaacuuagcuuuucaagguuuuuaggaugcucauaauaccauuuccgaguaaguuucagcaauaaugauuguagcaugaaaaauuguaaaauuucaauagcacuucccugugauuuuaauuaacaucacaaaauucauaauagauucagcaaauuaauauacuaaaacucaucauaguuuguggagag        g          c        au 
   gca g gguacaaAUAUGCCACUAC GUUAGUUGACCguua                                                                                                                                                                                                                                                                        agagaggg gagaagagac gagaggau  u
   ||| | ||||||||||||||||||| |||||||||||||||                                                                                                                                                                                                                                                                        |||||||| |||||||||| ||||||||   
   ugu c ccauguuuaUACGGUGAUG CAAUCAACUGGCGAu                                                                                                                                                                                                                                                                        uuuuuuuu uuuuucuuug uucucuug  u
aac   a a                   U               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------caacuggcaauucaguuaaaauauaacuggcuuuaugaggaccagguguccag        g          -        au 

Annotation confidence Low

Genome context

1: 19580903-19581367 [+]

Mature bdi-miR7758-5p

• Accession: MIMAT0030262
• Description: Brachypodium distachyon bdi-miR7758-5p mature miRNA
• Sequence: 16 - AUAUGCCACUACCGUUAGUUGACC - 39
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7758-3p

• Accession: MIMAT0030263
• Description: Brachypodium distachyon bdi-miR7758-3p mature miRNA
• Sequence: 423 - AGCGGUCAACUAACUGUAGUGGCAU - 447
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443