Stem-loop bdi-MIR7759

Accession

MI0025379

Description

Brachypodium distachyon bdi-MIR7759 precursor miRNA

Sequence

906 reads, 14.0 reads per million, 20 experiments

ggacacauagCAGCCACGUCGGCAUAAGCGAGuaccgcgggguugcuguugugcauucucaggguuuuuuuuaccgcaaaagcgccauucugguugauaugccuucugauuucugggaaugggagucagaauacaugggauauuugaagucaauuugggguuccaauuugguuucuguauccuggagaugaaggguuuaugggagcacaaggagagaagaacaucacuuuugcgaaaaaaaaccccugagaaagcaccacaucaacccguggcccUGGCUUAUGCCGACGUGGCUAccacauguccaa
(((((......((((((((((((((((((.((..(((((((.(((.(((.((((.(((((((((((((((((..((((((((.((((...)))).(((((.((((((((((((((....)))))))))))).....)).)))))......(((.((((....)))).)))(((((((((((((........)))))..)))))))).......((........)).)))))))))))))))).))))))))).)))).))).))))))))))..)).))))))))))))))))))......)))))..

Structure

--     cauagC                  G  ua       g   c   u    a         -        ac        ---------------------------------------------------------------------cgccauucugguu     g  -----            g 
  ggaca      AGCCACGUCGGCAUAAGC AG  ccgcggg uug ugu gugc uucucaggg uuuuuuuu  cgcaaaag                                                                                  gauau cc     uucugauuucug g
  |||||      |||||||||||||||||| ||  ||||||| ||| ||| |||| ||||||||| ||||||||  ||||||||                                                                                  ||||| ||     ||||||||||||  
  ccugu      UCGGUGCAGCCGUAUUCG Uc  ggugccc aac aca cacg aagaguccc aaaaaaaa  gcguuuuc                                                                                  uuaua gg     aagacugagggu a
aa     acaccA                  G  cc       -   u   c    a         c        --        acuacaagaagagaggaacacgaggguauuugggaaguagagguccuaugucuuugguuuaaccuugggguuuaacugaagu     g  uacau            a 

Annotation confidence Medium

Genome context

2: 47694041-47694348 [+]

Mature bdi-miR7759-5p

• Accession: MIMAT0030264
• Description: Brachypodium distachyon bdi-miR7759-5p mature miRNA
• Sequence: 11 - CAGCCACGUCGGCAUAAGCGAG - 32
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7759-3p

• Accession: MIMAT0030265
• Description: Brachypodium distachyon bdi-miR7759-3p mature miRNA
• Sequence: 276 - UGGCUUAUGCCGACGUGGCUA - 296
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443