Stem-loop bdi-MIR7760

Accession

MI0025380

Description

Brachypodium distachyon bdi-MIR7760 precursor miRNA

Sequence

2417 reads, 24.0 reads per million, 21 experiments

aggucuagugaggaguugacgcagCGGACAGAAUGGAGCAAGCAGCUCauggcgccgucaaggucggccgucucccacgaguccggcggcuggcggcgguggagguggugggagaacaggugaagugugcggcgacgugacggcuuuGCUCGGAGUGCUGUGGCGUuugguuggc
..(((............)))...((.(((.(((((..(((.(((.(((..((((((((((..((((.(((((((((((.(.((((.((.(....).)).))))..).))))))).(((.......))))))))))).)))))))...)))..)))))))))..))))).))).))

Structure

aggucuagugaggaguugacgca  G   A     GA   A   G   au   ---       ag    g    --------------       g -g    g  g u 
                       gC GAC GAAUG  GCA GCA CUC  ggc   gccguca  gucg ccgu              cucccac a  uccg cg c g
                       || ||| |||||  ||| ||| |||  |||   |||||||  |||| ||||              ||||||| |  |||| || |  
                       cg uug uuUGC  UGU CGU GAG  UCG   cggcagu  cagc ggcg              gagggug u  aggu gc g g
-----------------------  g   g     GG   -   -   GC   uuu       -g    -    ugugaaguggacaa       g gg    g  g c 

Annotation confidence Low

Genome context

3: 44260861-44261035 [+]

Mature bdi-miR7760-5p

• Accession: MIMAT0030266
• Description: Brachypodium distachyon bdi-miR7760-5p mature miRNA
• Sequence: 25 - CGGACAGAAUGGAGCAAGCAGCUC - 48
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7760-3p

• Accession: MIMAT0030267
• Description: Brachypodium distachyon bdi-miR7760-3p mature miRNA
• Sequence: 148 - GCUCGGAGUGCUGUGGCGU - 166
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443