Stem-loop bdi-MIR7761

Accession

MI0025381

Description

Brachypodium distachyon bdi-MIR7761 precursor miRNA

Sequence

26666 reads, 164.0 reads per million, 20 experiments

augcuuucugacguuguugccagugccgucucuuccucaaguucugguggggacaggauaggagugagugagaauggugguggugguggcagcagcgggauCGAAAGGGAGUUAGGGUUGGUUugggggcuuauauguuaaagucaugggcagguugggccgggccggcccaaccgcucacaaccacuaugauaaccacugaaauuauacucuagcccaaccuguccauaacuuuaauauguaauccccgcccccgcccccaccccaacccuaacccccucucaguacugccgccgcugccaccgccgccaccaccauuuccaguuccucucacccugucgccaccaacUCUUGAUCAAGAGACGGCUCUGGCggcaacgagg
...........((((((((((((.((((((((((..(((((...((((((.((((((...((((.((.((.((((((((((((((((((((((.((((.(.(((.((((.(((((((((((..(((((((((((((((((((((.(((((((((((((((.((((.((.....))))))........((((((..........)))))).....))))))))))))))).))))))))))))))...........)))))))..))))))))))).)))).)).)...).)))).)))))))))))))))))))....))))).)).))))...)))))).))))))...)))))..)))))))))).))))))))))))...

Structure

augcuuucuga            u          cc     uuc      g      aua    u  g  a   ----                   a    g --u -  A    A           UU       -----------              c               ----------------------------------c    c  c 
           cguuguugccag gccgucucuu  ucaag   uggugg gacagg   ggag ga ug gaa    uggugguggugguggcagc gcgg a   C GA AGGG GUUAGGGUUGG  ugggggc           uuauauguuaaagu augggcagguugggc                                   gggc gg c
           |||||||||||| ||||||||||  |||||   |||||| ||||||   |||| || || |||    ||||||||||||||||||| |||| |   | || |||| |||||||||||  |||||||           |||||||||||||| |||||||||||||||                                   |||| || c
           gcaacggCGGUC CGGCAGAGAA  AGUUC   accacc cugucc   ucuc uu ac cuu    accaccgccgccaccgucg cgcc u   g cu uccc caaucccaacc  acccccg           aauguauaauuuca uaccuguccaacccg                                   cucg cc a
--------gga            U          CU     Uca      g      cac    c  g  -   uacc                   c    g cau a  c    c           cc       cccccgccccu              a               aucucauauuaaagucaccaauaguaucaccaaca    -  a 

Annotation confidence Low

Genome context

3: 4507481-4507863 [-]

Mature bdi-miR7761-5p

• Accession: MIMAT0030268
• Description: Brachypodium distachyon bdi-miR7761-5p mature miRNA
• Sequence: 102 - CGAAAGGGAGUUAGGGUUGGUU - 123
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7761-3p

• Accession: MIMAT0030269
• Description: Brachypodium distachyon bdi-miR7761-3p mature miRNA
• Sequence: 350 - UCUUGAUCAAGAGACGGCUCUGGC - 373
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443