Stem-loop bdi-MIR7765

Accession

MI0025386

Description

Brachypodium distachyon bdi-MIR7765 precursor miRNA

Sequence

uugugagguggagCAUUUUAGUCCAACAAGUUGCAAaugagaaaaacuaguccuagaaguugagaugcagauugguuagagguccaaaccaauaaguguugacacguguccuguauaguuggcccagacaguuucuggguuuuuuuucugaaaagaaaacccccugugauuauugcgcaucccgcucaccuccuggggcgugacuagcagguccggcacgcgcacugccuccguccccggcggcaacggcuugcacgaucucaacacccugcccgucguagucaacggaaaccgagcagccgacgggacucucggcguguaccggggacaugugcauaaaucauuccuguccgggggcccuuuuugcgaaauuucuacggguccgacgugacuucauguugcugccaccuguccaauucggacuaauuggacuaaaaugcuuccacaucucaacuucuaggacuagguuuucccauuUUACAAGAAGUUGGACUAAAAUGCucacaccucucaaguu
(((.(((((((((((((((((((((((...(((.(((((.((((..(((((((((((((((((((((..((..(((....(((((((.(((((.......(((....))).......)))))(((.(((((.....(((((((((((....)))))))))))...((((((..((((((((((.....((.((.((((((.((...((((((.((...)).)).)))).)))))))).)).))...(((..((((((...............((((.(....).))))...(((((.((((....)).))))))))))))))))))))..))))))..))))))..))))).)))(((((..................)))))(((((((....))))))).........((((.....))))...))))))).....)))))..)))))))))))))))))))))..)))).)))))..)))...))))))))))))))))).)))))).)))...

Structure

---   u      -                 AAG   -C     a    aa                     ca  uu   -uaga       ------------------------------------accaauaaguguugacacguguccuguauaguugg   a     uuucuggguuuuuuuucugaaaagaaaacccccu      au      --    ----------------------------------------------------------------------------gcuca  u  u      u  cua    -  c  g 
   uug gaggug gagCAUUUUAGUCCAAC   UUG  AAaug gaaa  cuaguccuagaaguugagaug  ga  ggu     gguccaa                                                                       ccc gacag                                  gugauu  ugcgca  uccc                                                                                 cc cc ggggcg ga   gcag gu cg  
   ||| |||||| |||||||||||||||||   |||  ||||| ||||  |||||||||||||||||||||  ||  |||     |||||||                                                                       ||| |||||                                  ||||||  ||||||  ||||                                                                                 || || |||||| ||   |||| || || c
   aac cuccac cuCGUAAAAUCAGGUUG   AAC  Uuuac cuuu  gaucaggaucuucaacucuac  cu  ucg     ucagguu                                                                       ggg cuguc                                  uacuaa  acgugu  aggg                                                                                 gg gg cccugc cu   cguc cg gc  
uug   u      a                 AAG   AU     c    ug                     ac  --   uaaaa       aaucaggcuuaaccuguccaccgucguuguacuucagugcagccugggcaucuuuaaagcguuuuucccgg   c     --------------------------------cu      au      ac    gccaugugcggcucucagggcagccgacgagccaaaggcaacugaugcugcccgucccacaacucuagcacguucggcaac  c  c      -  --c    a  c  a 

Annotation confidence Not enough data

Genome context

2: 47611750-47612266 [+]

Mature bdi-miR7765-5p

• Accession: MIMAT0030278
• Description: Brachypodium distachyon bdi-miR7765-5p mature miRNA
• Sequence: 14 - CAUUUUAGUCCAACAAGUUGCAA - 36
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7765-3p

• Accession: MIMAT0030279
• Description: Brachypodium distachyon bdi-miR7765-3p mature miRNA
• Sequence: 478 - UUACAAGAAGUUGGACUAAAAUGC - 501
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443