Stem-loop bdi-MIR7765

Accession

MI0025386

Description

Brachypodium distachyon bdi-MIR7765 precursor miRNA

Sequence

3169 reads, 23.0 reads per million, 21 experiments

uugugagguggagcaUUUUAGUCCAACAAGUUGCAAAugagaaaaacuaguccuagaaguugagaugcagauugguuagagguccaaaccaauaaguguugacacguguccuguauaguuggcccagacaguuucuggguuuuuuuucugaaaagaaaacccccugugauuauugcgcaucccgcucaccuccuggggcgugacuagcagguccggcacgcgcacugccuccguccccggcggcaacggcuugcacgaucucaacacccugcccgucguagucaacggaaaccgagcagccgacgggacucucggcguguaccggggacaugugcauaaaucauuccuguccgggggcccuuuuugcgaaauuucuacggguccgacgugacuucauguugcugccaccuguccaauucggACUAAUUGGACUAAAAUGCUuccacaucucaacuucuaggacuagguuuucccauuuuacaagaaguuggacuaaaaugcucacaccucucaaguu
(((.(((((((((((((((((((((((...(((.(((((.((((..(((((((((((((((((((((..((..(((....(((((((.(((((.......(((....))).......)))))(((.(((((.....(((((((((((....)))))))))))...((((((..((((((((((.....((.((.((((((.((...((((((.((...)).)).)))).)))))))).)).))...(((..((((((...............((((.(....).))))...(((((.((((....)).))))))))))))))))))))..))))))..))))))..))))).)))(((((..................)))))(((((((....))))))).........((((.....))))...))))))).....)))))..)))))))))))))))))))))..)))).)))))..)))...))))))))))))))))).)))))).)))...

Structure

---   u      -                 AAG   -C     a    aa                     ca  uu   -uaga       accaauaaguguugacacguguccuguauaguuggcccagacaguuucuggguuuuuuuucugaaaagaaaacccccugugauuauugcgcaucccgcucaccuccuggggcgugacuagcagguccggcacgcgcacugccuccguccccggcggcaacggcuugcacgaucucaacacccugcccgucguagucaacggaaaccgagcagccgacgggacucucggcguguaccggggacaugugcauaaaucauuccuguccgggggcccuuuuugcgaaauuucuacggguccgacgugacuucauguugcugccaccu    a 
   uug gaggug gagcaUUUUAGUCCAAC   UUG  AAAug gaaa  cuaguccuagaaguugagaug  ga  ggu     gguccaa                                                                                                                                                                                                                                                                                                                                   gucc a
   ||| |||||| |||||||||||||||||   |||  ||||| ||||  |||||||||||||||||||||  ||  |||     |||||||                                                                                                                                                                                                                                                                                                                                   |||| u
   aac cuccac cucguaaaaucagguug   aac  uuuac cuuu  gaucaggaucuucaacucuac  cu  UCG     UCAGGUU                                                                                                                                                                                                                                                                                                                                   CAgg u
uug   u      a                 aag   au     c    ug                     ac  --   UAAAA       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAU    c 

Annotation confidence Low

Genome context

2: 47611750-47612266 [+]

Mature bdi-miR7765-5p

• Accession: MIMAT0030278
• Description: Brachypodium distachyon bdi-miR7765-5p mature miRNA
• Sequence: 16 - UUUUAGUCCAACAAGUUGCAAA - 37
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7765-3p

• Accession: MIMAT0030279
• Description: Brachypodium distachyon bdi-miR7765-3p mature miRNA
• Sequence: 422 - ACUAAUUGGACUAAAAUGCU - 441
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443