Stem-loop bdi-MIR7769

Accession

MI0025391

Description

Brachypodium distachyon bdi-MIR7769 precursor miRNA

Sequence

1984 reads, 19.0 reads per million, 21 experiments

acUGUGGGACCCACCCGUCAGUGccaacaugccagccugggcuugccugcauguagcgagucgaugccgaucgccuugccuagagcuucggcggcggcucacgcggggcagagcgcguggcggcuggccacgcggggugagagcgucagcggcgugcacgugccaaggcgacgacagcgccugugcgagggcgggaacggcggcuggucccgagggccauggcgacgaaggcuucaaagcacggugggcacgcgggcgggcugggcaagccaucggcauaccgaagcugggcaaggccauuggcaucaccccgaucuacgcuggcaagcacagacugUCAUGUUGGCACUGAUGGGUGggccgcaccgg
.(.(((((.((((((((((((((((((((((.(((.(((.(((((((.((..((((((.(..(((((((((.(((((((((..((((((((.(.(((((.((((....((...((((((((.....))))))))...))...)))).)))..(((.(.((((((.(((((.(....))))))((((((((.(.....((.((.(((((((...)))))).).)).))..).))))...))))....)))))).).)))((((.....))))..)).)...))))))))))))))))).)))))))))..).))..)))))).))))))).))).))).)))))))))))))))))))))))).))).).

Structure

a U   -  A                      c   c   g       u  au    --  a uc         c         ag        --c g  gcucacgcggggcagagcgcguggcggcuggccacgcggggugagagcgucagcgg   g a      aaggcgacgacagcgccu    ---    g gggaa  g  g -      c 
 c GUG GG CCCACCCGUCAGUGccaacaug cag cug gcuugcc gc  guag  cg g  gaugccgau gccuugccu  agcuucgg   g cg                                                        cgu c cgugcc                  gugc   gagg c     cg cg c uggucc  
 | ||| || |||||||||||||||||||||| ||| ||| ||||||| ||  ||||  || |  ||||||||| |||||||||  ||||||||   | ||                                                        ||| | ||||||                  ||||   |||| |     || || | |||||| g
 g cac cc ggGUGGGUAGUCACGGUUGUAC guc gac cgaacgg cg  cauc  gc c  cuacgguua cggaacggg  ucgaagcc   c gc                                                        gcg g gcacgg                  cacg   cuuc g     gc gc g accggg  
g c   g  -                      U   a   a       u  --    ua  c ca         c         --        aua g  -----------------------------------------uaccgaacgggucgg   g c      --------------gugg    aaa    g ---aa  a  g u      a 

Annotation confidence Low

Genome context

1: 2375800-2376168 [+]

Mature bdi-miR7769-5p

• Accession: MIMAT0030288
• Description: Brachypodium distachyon bdi-miR7769-5p mature miRNA
• Sequence: 3 - UGUGGGACCCACCCGUCAGUG - 23
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7769-3p

• Accession: MIMAT0030289
• Description: Brachypodium distachyon bdi-miR7769-3p mature miRNA
• Sequence: 338 - UCAUGUUGGCACUGAUGGGUG - 358
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443