Stem-loop bdi-MIR7779

Accession

MI0025401

Description

Brachypodium distachyon bdi-MIR7779 precursor miRNA

Sequence

47983 reads, 252.0 reads per million, 21 experiments

gggcagcgacGAGGUCAUUGUCAGACAUGGGAAGucccacgucagcccucggccagaucaucggagaccuccuuaaucuuggugcaauggucaaugauggagcccuugcacgaugcgaugaaguuugugcaacgucuccacgauggccuaggccauaggaauggucgccuuuugguccaugaucaugCCGAAGACGGAGGAGGAAACUGUGgaguggauucacgaacaaaucgaugauccgccaauuguuguccuugaggucaaugugguuccugaugucauacuucucgaucuguagaccgaucuaguagcgcuagug
.(((.((.((.(((((.((..((((..((((((((...(((((((.((.((((..((((((((....(((((((..((((.(.(((.(((((.....(((((.(.((((((((.((......)))))))))).).)))))..(((((....)))))....((((..(((....)))))))))))))))).))))..)))))))....((((((.....)))))).......)))))))).)))....((((.((....)).))))).))...)))))))...)))))))).))))..))..))))).)).)))))....

Structure

---g   a  g  G     -A  GU    CA        ccc       --c  u ----------------------   ca        ------------------------gaga       aa    g u   a     aaugauggagcccuugcacgaugcgaugaaguuugugcaacgu 
    ggc gc ac AGGUC  UU  CAGA  UGGGAAGu   acgucag   cc c                      ggc  gaucaucg                            ccuccuu  ucuu g gca ugguc                                           c
    ||| || || |||||  ||  ||||  ||||||||   |||||||   || |                      |||  ||||||||                            |||||||  |||| | ||| |||||                                            
    ucg cg ug ucuag  ag  gucu  gcucuuca   uguaguc   gg g                      ccg  cuaguagc                            GGAGGAG  AGAA C Cgu acuag                                           u
guga   -  a  a     cc  au    -a        uac       cuu  u uaacuggaguuccuguuguuaa   -c        uaaacaagcacuuaggugagGUGUCAAA       GC    G -   -     uaccugguuuuccgcugguaaggauaccggauccgguagcacc 

Annotation confidence Low

Genome context

1: 38848227-38848545 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7779

Mature bdi-miR7779-5p

• Accession: MIMAT0030312
• Description: Brachypodium distachyon bdi-miR7779-5p mature miRNA
• Sequence: 11 - GAGGUCAUUGUCAGACAUGGGAAG - 34
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7779-3p

• Accession: MIMAT0030313
• Description: Brachypodium distachyon bdi-miR7779-3p mature miRNA
• Sequence: 188 - CCGAAGACGGAGGAGGAAACUGUG - 211
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443