miRBase entry: hhi-mir-196

Stem-loop hhi-mir-196

Accession

MI0025435

Description

Hippoglossus hippoglossus hhi-mir-196 precursor miRNA

Literature search

2 open access papers mention hhi-mir-196
(7 sentences)

Sequence

gcggacuguugagugguuUAGGUAGUCUCAUGUUGUUGGGcuaaauuauuucucccacaacacgaaacugccuugauuaccucagua
....((((..(.((((((.(((((((.((.((((((.(((..(((...)))..))))))))).)).))))))).))))))).)))).

Structure

gcgg    uu a      U       C  A      U   cu   u 
    acug  g gugguu AGGUAGU UC UGUUGU GGG  aaa  
    ||||  | |||||| ||||||| || |||||| |||  ||| u
    ugac  c cauuag uccguca ag acaaca ccc  uuu  
---a    -u -      u       a  c      -   uc   a

Annotation confidence Not enough data

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Genome context

Unknown

Database links

Mature hhi-miR-196

Accession	MIMAT0030357
Description	Hippoglossus hippoglossus hhi-miR-196 mature miRNA
Sequence	19 - UAGGUAGUCUCAUGUUGUUGGG - 40
Evidence	experimental SOLiD [1]

References

PubMed ID: 23626677
Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut
Bizuayehu TT, Fernandes JM, Johansen SD, Babiak I
PLoS One (2013) 8:e61378