Stem-loop rgl-MIR7808

Accession

MI0025462

Description

Rehmannia glutinosa rgl-MIR7808 precursor miRNA

Sequence

auaucaucugcgucgaauccuccgccguucucaugcacuuuaaucggcacgcuuacauauucaaacggccuccccuuaacagcagcauccauguuuccagcaugcaagaggcgaaaacucaagaaaaauuucagaacccuagccuugaagaaaauggugagagaauuugugcagccauugauuuggaggauuuuauuagugauuaauggaguaaauuaguggugauuuuguuaauaauuaggggugauuacauuacauuaguguucugaguuguggaaauggguagaagggAAGGAUGCUCGAUUCAGAAGAAgu
...((.((((.((((((((((((......(((((.(((.....((((.(((((..............(((((...(((((((..((((.....((((((.(((....(((((......((..(((....))).))......))))).......))).)).))))....)))).(((((((((((.....(((((((((.....))))))))))))))))))))....)))))))......)))))..............))))).))))...)))...)))))......)).)))))..))))).)))).))...

Structure

aua  a    c     --     -  gccguu     --g   uuuaa    c     uacauauucaaacg     ---ccc       -----------------------------------------------------ca    ccaug    -  g   ---gcaa     gaaaac  aa   a 
   uc ucug gucga  auccu cc      cucau   cac     ucgg acgcu              gccuc      uuaacag                                                       gcau     uuuc ca cau       gaggc      uc  gaa a
   || |||| |||||  ||||| ||      |||||   |||     |||| |||||              |||||      |||||||                                                       ||||     |||| || |||       |||||      ||  |||  
   AG AGAC UAGCU  UAGGA gg      gggua   gug     aguc uguga              ugggg      aauuguu                                                       cgug     agag gu gua       uuccg      ag  cuu a
ugA  A    U     CG     A  gaagau     aag   --uug    u     uuacauuacauuag     auuaau       uuaguggugauuaaaugagguaauuagugauuauuuuaggagguuuaguuaccga    -uuua    a  g   aaagaag     auccca  -a   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rgl-miR7808

• Accession: MIMAT0032254
• Description: Rehmannia glutinosa rgl-miR7808 mature miRNA
• Sequence: 292 - AAGGAUGCUCGAUUCAGAAGAA - 313
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23861915
   Transcriptome/degradome-wide identification of R. glutinosa miRNAs and their targets: the role of miRNA activity in the replanting disease
   Li MJ, Yang YH, Chen XJ, Wang FQ, Lin WX, Yi YJ, Zeng L, Yang SY, Zhang ZY
   PLoS One (2013) 8:e68531