Stem-loop bta-mir-7857-1

Accession

MI0025527

Description

Bos taurus bta-mir-7857-1 precursor miRNA

Literature search

1 open access papers mention bta-mir-7857-1
(1 sentences)

Sequence

16608 reads, 7.0 reads per million, 260 experiments

AUAGCCAGUUGGGGAAGAAUGCccgugucuuaaagugagaaggUUUGUUCUCCAACCUGGCUCUUU
..((((((((((((((.((.(((....(((((...))))).))))).)))))))).))))))....

Structure

--AU      -        G  U   cgug     a 
    AGCCAG UUGGGGAA AA GCc    ucuua  
    |||||| |||||||| || |||    ||||| a
    UCGGUC AACCUCUU UU Ugg    agagu  
UUUC      C        G  -   ---a     g 

Annotation confidence High

Genome context

23: 31119451-31119516 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-7857-1

Mature bta-miR-7857-5p

• Accession: MIMAT0030432
• Description: Bos taurus bta-miR-7857-5p mature miRNA
• Sequence: 1 - AUAGCCAGUUGGGGAAGAAUGC - 22
• Evidence: experimental ; Illumina [1]

Mature bta-miR-7857-1-3p

• Accession: MIMAT0051046
• Description: Bos taurus bta-miR-7857-1-3p mature miRNA
• Sequence: 44 - UUUGUUCUCCAACCUGGCUCUUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23472090
   Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection
   Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ
   PLoS One (2013) 8:e57543