Stem-loop bta-mir-7857-1

Accession

MI0025527

Description

Bos taurus bta-mir-7857-1 precursor miRNA

Literature search

1 open access papers mention bta-mir-7857-1
(1 sentences)

Sequence

263 reads, 2 reads per million, 49 experiments

AUAGCCAGUUGGGGAAGAAUGCccgugucuuaaagugagaagguuuguucuccaaccuggcucuuu
..((((((((((((((.((.(((....(((((...))))).))))).)))))))).))))))....

Structure

--AU      -        G  U   cgug     a 
    AGCCAG UUGGGGAA AA GCc    ucuua  
    |||||| |||||||| || |||    ||||| a
    ucgguc aaccucuu uu ugg    agagu  
uuuc      c        g  -   ---a     g 

Annotation confidence Not enough data

Genome context

chr23: 30973815-30973880 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-7857-1

Mature bta-miR-7857-5p

• Accession: MIMAT0030432
• Description: Bos taurus bta-miR-7857-5p mature miRNA
• Sequence: 1 - AUAGCCAGUUGGGGAAGAAUGC - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23472090
   Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection
   Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ
   PLoS One (2013) 8:e57543