Stem-loop bta-mir-6516

Accession

MI0025538

Description

Bos taurus bta-mir-6516 precursor miRNA

Literature search

3 open access papers mention bta-mir-6516
(5 sentences)

Sequence

9436 reads, 7.0 reads per million, 265 experiments

UUUGCAGUAACAGGUGUGAACauucuagcagcaguuugaugAUCAUGUAUGAUACUGCAAAC
(((((((((.((..(((((.((((..(((....))).)))).)))))..)).))))))))).

Structure

-         A  GG     A    cu   a 
 UUUGCAGUA CA  UGUGA Cauu  agc g
 ||||||||| ||  ||||| ||||  |||  
 AAACGUCAU GU  GUACU guag  uug c
C         A  AU     A    -u   a 

Annotation confidence High

Genome context

19: 54798624-54798685 [+]

Mature bta-miR-6516-5p

• Accession: MIMAT0030443
• Description: Bos taurus bta-miR-6516-5p mature miRNA
• Sequence: 1 - UUUGCAGUAACAGGUGUGAAC - 21
• Evidence: experimental ; Illumina [1]

Mature bta-miR-6516-3p

• Accession: MIMAT0051056
• Description: Bos taurus bta-miR-6516-3p mature miRNA
• Sequence: 42 - AUCAUGUAUGAUACUGCAAAC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23472090
   Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection
   Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ
   PLoS One (2013) 8:e57543