miRBase entry: prd-mir-100

Stem-loop prd-mir-100

Accession

MI0025548

Description

Panagrellus redivivus prd-mir-100 precursor miRNA

Sequence

AACCCGUAGAUCCGAACUUGUGUUcugucaacaagaaaCACAUCUUCGGGUAUGGGUCGG
.((((((..(((((((..((((((((.......)).))))))..)))))))))))))...

Structure

--A      AG       CU      -  gu 
   ACCCGU  AUCCGAA  UGUGUU cu  c
   ||||||  |||||||  |||||| ||  a
   UGGGUA  UGGGCUU  ACACaa ga  a
GGC      --       CU      a  ac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KB454933.1: 109204-109263 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-100-5p

Accession	MIMAT0030454
Description	Panagrellus redivivus prd-miR-100-5p mature miRNA
Sequence	1 - AACCCGUAGAUCCGAACUUGUGUU - 24
Evidence	experimental Illumina [1]

Mature prd-miR-100-3p

Accession	MIMAT0030455
Description	Panagrellus redivivus prd-miR-100-3p mature miRNA
Sequence	39 - CACAUCUUCGGGUAUGGGUCGG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295