miRBase entry: prd-mir-5359

Stem-loop prd-mir-5359

Accession

MI0025555

Description

Panagrellus redivivus prd-mir-5359 precursor miRNA

Sequence

UCUGGGAUUUUUUAUAUUGGUauugacuuuggaaacuaCCAAUAUAAAUCAUUCUAGUAC
.(((((((..((((((((((((((..(...)..)).))))))))))))..)))))))...

Structure

--U       UU            -  ga u 
   CUGGGAU  UUUAUAUUGGUa uu  c  
   |||||||  |||||||||||| ||  | u
   GAUCUUA  AAAUAUAACCau aa  g  
CAU       CU            c  ag u

Annotation confidence Not enough data

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Genome context

KB455188.1: 47142-47201 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-5359

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-5359-5p

Accession	MIMAT0030468
Description	Panagrellus redivivus prd-miR-5359-5p mature miRNA
Sequence	1 - UCUGGGAUUUUUUAUAUUGGU - 21
Evidence	experimental Illumina [1]

Mature prd-miR-5359-3p

Accession	MIMAT0030469
Description	Panagrellus redivivus prd-miR-5359-3p mature miRNA
Sequence	39 - CCAAUAUAAAUCAUUCUAGUAC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295