miRBase entry: prd-mir-7882

Stem-loop prd-mir-7882

Accession

MI0025582

Description

Panagrellus redivivus prd-mir-7882 precursor miRNA

Sequence

CGACACUUUGUGGGAUGCGUUagagccaaccuuaccaaCGCAUUCCAUGGCGUGUCGCC
((((((.((((((((((((((.(((.....)))...)))))))))))))).))))))..

Structure

--      U              --a   c 
  CGACAC UUGUGGGAUGCGUU   gag c
  |||||| ||||||||||||||   ||| a
  GCUGUG GGUACCUUACGCaa   uuc a
CC      C              cca   c

Annotation confidence Not enough data

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Genome context

KB455543.1: 82436-82494 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7882

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7882-5p

Accession	MIMAT0030522
Description	Panagrellus redivivus prd-miR-7882-5p mature miRNA
Sequence	1 - CGACACUUUGUGGGAUGCGUU - 21
Evidence	experimental Illumina [1]

Mature prd-miR-7882-3p

Accession	MIMAT0030523
Description	Panagrellus redivivus prd-miR-7882-3p mature miRNA
Sequence	39 - CGCAUUCCAUGGCGUGUCGCC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295