miRBase entry: prd-mir-7940c

Accession

MI0025589

Description

Panagrellus redivivus prd-mir-7940c precursor miRNA

Sequence

UGUGAGACGGAUCUCCGGUCAUUugcaaugaguuaaUGACUGGAAUUGCGUCUUUCGU
.(.((((((.(..((((((((((.((.....)).))))))))))..).)))))).)..

Structure

-U U      G UC          u  a 
  G GAGACG A  UCCGGUCAUU gc a
  | |||||| |  |||||||||| || u
  C UUCUGC U  AGGUCAGUaa ug g
UG U      G UA          u  a

Annotation confidence Not enough data

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Genome context

KB455127.1: 278641-278698 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7940c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0030536
Description	Panagrellus redivivus prd-miR-7940c-5p mature miRNA
Sequence	1 - UGUGAGACGGAUCUCCGGUCAUU - 23
Evidence	experimental Illumina [1]

Accession	MIMAT0030537
Description	Panagrellus redivivus prd-miR-7940c-3p mature miRNA
Sequence	37 - UGACUGGAAUUGCGUCUUUCGU - 58
Evidence	experimental Illumina [1]

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295