Stem-loop prd-mir-7889

Accession

MI0025596

Description

Panagrellus redivivus prd-mir-7889 precursor miRNA

Sequence

CAAUGCAUCUGAUUAUCCUCAACuuacugaauguucacguUGAGGAAGUCGAUGGCAUUCG
.((((((((.((((.((((((((..((.....))....))))))))))))))).)))))..

Structure

-C     -   U    A        --uu  u 
  AAUGC AUC GAUU UCCUCAAC    ac g
  ||||| ||| |||| ||||||||    || a
  UUACG UAG CUGA AGGAGUug    ug a
GC     G   -    -        cacu  u 

Annotation confidence Not enough data

Genome context

KB455323.1: 202047-202107 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7889

Mature prd-miR-7889-5p

• Accession: MIMAT0030550
• Description: Panagrellus redivivus prd-miR-7889-5p mature miRNA
• Sequence: 1 - CAAUGCAUCUGAUUAUCCUCAAC - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7889-3p

• Accession: MIMAT0030551
• Description: Panagrellus redivivus prd-miR-7889-3p mature miRNA
• Sequence: 41 - UGAGGAAGUCGAUGGCAUUCG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295