miRBase entry: prd-mir-58

Stem-loop prd-mir-58

Accession

MI0025601

Description

Panagrellus redivivus prd-mir-58 precursor miRNA

Sequence

CUGGAUCUGCUUUGCGUCUCAUGguuuaguauaucacaUGAGAUCAUUCCAGAUUCAUUU
.((((((((...((.((((((((.............))))))))))...))))))))...

Structure

--C        CUU  C        guuua 
   UGGAUCUG   UG GUCUCAUG     g
   ||||||||   || ||||||||     u
   ACUUAGAC   AC UAGAGUac     a
UUU        CUU  -        acuau

Annotation confidence Not enough data

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Genome context

KB455444.1: 61791-61850 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-58

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-58-5p

Accession	MIMAT0030560
Description	Panagrellus redivivus prd-miR-58-5p mature miRNA
Sequence	1 - CUGGAUCUGCUUUGCGUCUCAUG - 23
Evidence	experimental Illumina [1]

Mature prd-miR-58-3p

Accession	MIMAT0030561
Description	Panagrellus redivivus prd-miR-58-3p mature miRNA
Sequence	39 - UGAGAUCAUUCCAGAUUCAUUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295