miRBase entry: prd-mir-7911c-1

Stem-loop prd-mir-7911c-1

Accession

MI0025602

Description

Panagrellus redivivus prd-mir-7911c-1 precursor miRNA

Sequence

GUCCUCCCGACCGAUGCACCAUGauugauguuggauuuauCAUGGUGUCUUAGUCAGGGGUAG
...((((.(((.((.((((((((((.(((.....))).)))))))))).)).))).))))...

Structure

GUC    C   C  U          u   g 
   CUCC GAC GA GCACCAUGau gau u
   |||| ||| || |||||||||| ||| u
   GGGG CUG UU UGUGGUACua uua g
GAU    A   A  C          u   g

Annotation confidence Not enough data

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Genome context

KB455573.1: 330362-330424 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-7911c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7911c-5p

Accession	MIMAT0030562
Description	Panagrellus redivivus prd-miR-7911c-5p mature miRNA
Sequence	1 - GUCCUCCCGACCGAUGCACCAUG - 23
Evidence	experimental Illumina [1]

Mature prd-miR-7911c-3p

Accession	MIMAT0030563
Description	Panagrellus redivivus prd-miR-7911c-3p mature miRNA
Sequence	41 - CAUGGUGUCUUAGUCAGGGGUAG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295