miRBase entry: prd-mir-61

Stem-loop prd-mir-61

Accession

MI0025610

Description

Panagrellus redivivus prd-mir-61 precursor miRNA

Sequence

AUGGGUAUGAGUCACAGUCAUGcggucauuguaaaccaUGACUAGAUCCAUACUCAGCU
.((((((((.(((..(((((((.(...........)))))))).))).))))))))...

Structure

--A        A   AC       c guca 
   UGGGUAUG GUC  AGUCAUG g    u
   |||||||| |||  ||||||| |    u
   ACUCAUAC UAG  UCAGUac c    g
UCG        C   -A       - aaau

Annotation confidence Not enough data

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Genome context

KB455367.1: 125174-125232 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-61

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-61-5p

Accession	MIMAT0030578
Description	Panagrellus redivivus prd-miR-61-5p mature miRNA
Sequence	1 - AUGGGUAUGAGUCACAGUCAUG - 22
Evidence	experimental Illumina [1]

Mature prd-miR-61-3p

Accession	MIMAT0030579
Description	Panagrellus redivivus prd-miR-61-3p mature miRNA
Sequence	39 - UGACUAGAUCCAUACUCAGCU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295