Stem-loop prd-mir-7880b

Accession

MI0025613

Description

Panagrellus redivivus prd-mir-7880b precursor miRNA

Sequence

UGGCUUCGAUCGGUUACAAACUguaucaaaucacaagUUUGCGACUGUAUCCAGGCCAU
((((((.((((((((.((((((((........)).)))))).))))).))).)))))).

Structure

-      C   -     A      -  auc 
 UGGCUU GAU CGGUU CAAACU gu   a
 |||||| ||| ||||| |||||| ||    
 ACCGGA CUA GUCAG GUUUga ca   a
U      C   U     C      a  cua 

Annotation confidence Not enough data

Genome context

KB455157.1: 45748-45806 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from prd-mir-7880b

Mature prd-miR-7880b-5p

• Accession: MIMAT0030584
• Description: Panagrellus redivivus prd-miR-7880b-5p mature miRNA
• Sequence: 1 - UGGCUUCGAUCGGUUACAAACU - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7880b-3p

• Accession: MIMAT0030585
• Description: Panagrellus redivivus prd-miR-7880b-3p mature miRNA
• Sequence: 38 - UUUGCGACUGUAUCCAGGCCAU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295