miRBase entry: prd-mir-7880c

Stem-loop prd-mir-7880c

Accession

MI0025616

Description

Panagrellus redivivus prd-mir-7880c precursor miRNA

Sequence

AGGUUUGGAUAGGUAGCAAGCUugguuuuuacucaucagUUUGCGACCAUAUCCAAGCUCCU
.(((((((((((((.(((((((.(((........)))))))))).))).))))))))))...

Structure

--A          -   A       u   uuu 
   GGUUUGGAUA GGU GCAAGCU ggu   u
   |||||||||| ||| ||||||| |||    
   UCGAACCUAU CCA CGUUUga cua   a
UCC          A   G       -   cuc

Annotation confidence Not enough data

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Genome context

KB455157.1: 45529-45590 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from prd-mir-7880c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7880c-5p

Accession	MIMAT0030590
Description	Panagrellus redivivus prd-miR-7880c-5p mature miRNA
Sequence	1 - AGGUUUGGAUAGGUAGCAAGCU - 22
Evidence	experimental Illumina [1]

Mature prd-miR-7880c-3p

Accession	MIMAT0030591
Description	Panagrellus redivivus prd-miR-7880c-3p mature miRNA
Sequence	40 - UUUGCGACCAUAUCCAAGCUCCU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295