miRBase entry: prd-mir-240

Stem-loop prd-mir-240

Accession

MI0025617

Description

Panagrellus redivivus prd-mir-240 precursor miRNA

Sequence

UCCAGAGUUUGACGCGCUAGAAUGuuuucugaucaucaUACUGGCCUUUCAAACUCUUGGG
.(((((((((((...(((((.(((............))).)))))...)))))))).))).

Structure

U   -        CGC     A   uuuuc 
 CCA GAGUUUGA   GCUAG AUG     u
 ||| ||||||||   ||||| |||      
 GGU CUCAAACU   CGGUC Uac     g
G   U        UUC     A   uacua

Annotation confidence Not enough data

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Genome context

KB455188.1: 52367-52427 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-240

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-240-5p

Accession	MIMAT0030592
Description	Panagrellus redivivus prd-miR-240-5p mature miRNA
Sequence	1 - UCCAGAGUUUGACGCGCUAGAAUG - 24
Evidence	experimental Illumina [1]

Mature prd-miR-240-3p

Accession	MIMAT0030593
Description	Panagrellus redivivus prd-miR-240-3p mature miRNA
Sequence	39 - UACUGGCCUUUCAAACUCUUGGG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295