Stem-loop prd-mir-7927c

Accession

MI0025626

Description

Panagrellus redivivus prd-mir-7927c precursor miRNA

Sequence

CGGGGCGUUUCUUUGACUGAUGugguuauguuuaUCAGUCGUUGAAGUGCUUUGGU
(((((((((((..(((((((((..........)))))))))..)))))))))))..

Structure

--           UU         uggu 
  CGGGGCGUUUC  UGACUGAUG    u
  |||||||||||  |||||||||     
  GUUUCGUGAAG  GCUGACUau    a
UG           UU         uugu 

Annotation confidence Not enough data

Genome context

KB455257.1: 509082-509137 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-7927c

Mature prd-miR-7927c-5p

• Accession: MIMAT0030610
• Description: Panagrellus redivivus prd-miR-7927c-5p mature miRNA
• Sequence: 1 - CGGGGCGUUUCUUUGACUGAUG - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7927c-3p

• Accession: MIMAT0030611
• Description: Panagrellus redivivus prd-miR-7927c-3p mature miRNA
• Sequence: 35 - UCAGUCGUUGAAGUGCUUUGGU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295