miRBase entry: prd-mir-7906

Stem-loop prd-mir-7906

Accession

MI0025633

Description

Panagrellus redivivus prd-mir-7906 precursor miRNA

Sequence

CAAACGCACAUGGGGUUGACGaugagguguuuUCAAUGUGCCUGUGGCUGUAAUUcucaaaaa
.....((.(((((((((((.(((.....))).)))))...))))))))...............

Structure

----------CAAAC  A      ---     C   g 
               GC CAUGGG   GUUGA Gau a
               || ||||||   ||||| ||| g
               CG GUGUCC   UAACU uug g
aaaaacucUUAAUGU  -      GUG     u   u

Annotation confidence Not enough data

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Genome context

KB455257.1: 464960-465022 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7906

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7906-5p

Accession	MIMAT0030624
Description	Panagrellus redivivus prd-miR-7906-5p mature miRNA
Sequence	1 - CAAACGCACAUGGGGUUGACG - 21
Evidence	experimental Illumina [1]

Mature prd-miR-7906-3p

Accession	MIMAT0030625
Description	Panagrellus redivivus prd-miR-7906-3p mature miRNA
Sequence	33 - UCAAUGUGCCUGUGGCUGUAAUU - 55
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295