miRBase entry: prd-mir-7579

Stem-loop prd-mir-7579

Accession

MI0025636

Description

Panagrellus redivivus prd-mir-7579 precursor miRNA

Sequence

CAUCACCCUCAGCAUUCUCAACauguccaaaaaucacgUUGAGAAUUUGUGGGCGGUAA
.(((.(((.(((.(((((((((.((.........)).)))))))))))).))).)))..

Structure

-C   A   U   C         a  ucc 
  AUC CCC CAG AUUCUCAAC ug   a
  ||| ||| ||| ||||||||| ||   a
  UGG GGG GUU UAAGAGUUg ac   a
AA   C   U   -         c  uaa

Annotation confidence Not enough data

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Genome context

KB455551.1: 21318-21376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7579

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7579-5p

Accession	MIMAT0030630
Description	Panagrellus redivivus prd-miR-7579-5p mature miRNA
Sequence	1 - CAUCACCCUCAGCAUUCUCAAC - 22
Evidence	experimental Illumina [1]

Mature prd-miR-7579-3p

Accession	MIMAT0030631
Description	Panagrellus redivivus prd-miR-7579-3p mature miRNA
Sequence	39 - UUGAGAAUUUGUGGGCGGUAA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295