Stem-loop prd-mir-7939h

Accession

MI0025652

Description

Panagrellus redivivus prd-mir-7939h precursor miRNA

Sequence

UAUGAGCCCUCAUGACAUUCUUGuuaucacuaaaaucaUGAAUGUUAUGAAGGCCCACGAC
..((.(((.(((((((((((.((.............)).))))))))))).))).))....

Structure

--UA  A   C           U  uuauc 
    UG GCC UCAUGACAUUC UG     a
    || ||| ||||||||||| ||     c
    AC CGG AGUAUUGUAAG ac     u
CAGC  C   A           U  uaaaa 

Annotation confidence Not enough data

Genome context

KB455091.1: 117063-117123 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-7939h

Mature prd-miR-7939h-5p

• Accession: MIMAT0030662
• Description: Panagrellus redivivus prd-miR-7939h-5p mature miRNA
• Sequence: 1 - UAUGAGCCCUCAUGACAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939h-3p

• Accession: MIMAT0030663
• Description: Panagrellus redivivus prd-miR-7939h-3p mature miRNA
• Sequence: 39 - UGAAUGUUAUGAAGGCCCACGAC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295