Stem-loop prd-mir-40

Accession

MI0025661

Description

Panagrellus redivivus prd-mir-40 precursor miRNA

Sequence

AGUGGAUGUAUUCCACGGUGAGUguaucaucagacacuacUCACCGGGUUUGCAUUCAUUC
.(((((((((..((.((((((((((.((....)).)).))))))))))..)))))))))..

Structure

-A         UU  A        -  a  a 
  GUGGAUGUA  CC CGGUGAGU gu uc u
  |||||||||  || |||||||| || ||  
  UACUUACGU  GG GCCACUca ca ag c
CU         UU  -        u  c  a 

Annotation confidence Low

Genome context

KB455309.1: 32503-32563 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from prd-mir-40

Mature prd-miR-40-5p

• Accession: MIMAT0030680
• Description: Panagrellus redivivus prd-miR-40-5p mature miRNA
• Sequence: 1 - AGUGGAUGUAUUCCACGGUGAGU - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-40-3p

• Accession: MIMAT0030681
• Description: Panagrellus redivivus prd-miR-40-3p mature miRNA
• Sequence: 41 - UCACCGGGUUUGCAUUCAUUC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295