Stem-loop prd-mir-7948a

Accession

MI0025685

Description

Panagrellus redivivus prd-mir-7948a precursor miRNA

Sequence

CAUCGGCCCAAUGUUGCGUUGCUgugucauuugaaaucagCAAACGCACAUGGAGUCUGUGAU
(((.((((((.(((.(((((((((..((....))...)))).))))))))))).))).)))..

Structure

--   C   -   A   U     -    -ug  a 
  CAU GGC CCA UGU GCGUU GCUg   uc u
  ||| ||| ||| ||| ||||| ||||   ||  
  GUG CUG GGU ACA CGCAA Cgac   ag u
UA   U   A   -   -     A    uaa  u 

Annotation confidence Not enough data

Genome context

KB455445.1: 36701-36763 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7948a

Mature prd-miR-7948a-5p

• Accession: MIMAT0030728
• Description: Panagrellus redivivus prd-miR-7948a-5p mature miRNA
• Sequence: 1 - CAUCGGCCCAAUGUUGCGUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7948a-3p

• Accession: MIMAT0030729
• Description: Panagrellus redivivus prd-miR-7948a-3p mature miRNA
• Sequence: 41 - CAAACGCACAUGGAGUCUGUGAU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295