Stem-loop prd-mir-7941

Accession

MI0025692

Description

Panagrellus redivivus prd-mir-7941 precursor miRNA

Sequence

CUCCGCGGGCCUUGUUAAAGCguuauuguaaggcugcUUUAACCAUGUUGAUCGCGGACG
.(((((((((...(((((((((((.......))).))))))))...))...)))))))..

Structure

-C       ---  CUU        -   au 
  UCCGCGG   GC   GUUAAAGC guu  u
  |||||||   ||   |||||||| |||  g
  AGGCGCU   UG   CAAUUUcg cgg  u
GC       AGU  UAC        u   aa 

Annotation confidence Not enough data

Genome context

KB455323.1: 201741-201800 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7941

Mature prd-miR-7941-5p

• Accession: MIMAT0030742
• Description: Panagrellus redivivus prd-miR-7941-5p mature miRNA
• Sequence: 1 - CUCCGCGGGCCUUGUUAAAGC - 21
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7941-3p

• Accession: MIMAT0030743
• Description: Panagrellus redivivus prd-miR-7941-3p mature miRNA
• Sequence: 38 - UUUAACCAUGUUGAUCGCGGACG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295