Stem-loop prd-mir-7947

Accession

MI0025700

Description

Panagrellus redivivus prd-mir-7947 precursor miRNA

Sequence

GUAAGUUCGCGCAAAGACAAGUguguuaguuuagcauUUGAACCUUGCCGUCUUACAG
(((((..((.((((...(((((((.........)))))))....)))))).)))))..

Structure

--     UU  C    -AGA       guu 
  GUAAG  CG GCAA    CAAGUgu   a
  |||||  || ||||    |||||||   g
  CAUUC  GC CGUU    GUUuacg   u
GA     -U  -    CCAA       auu 

Annotation confidence Not enough data

Genome context

KB455419.1: 99960-100017 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7947

Mature prd-miR-7947-5p

• Accession: MIMAT0030758
• Description: Panagrellus redivivus prd-miR-7947-5p mature miRNA
• Sequence: 1 - GUAAGUUCGCGCAAAGACAAGU - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7947-3p

• Accession: MIMAT0030759
• Description: Panagrellus redivivus prd-miR-7947-3p mature miRNA
• Sequence: 38 - UUGAACCUUGCCGUCUUACAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295