miRBase entry: prd-mir-255

Stem-loop prd-mir-255

Accession

MI0025701

Description

Panagrellus redivivus prd-mir-255 precursor miRNA

Sequence

GUAAGAAAUCAGUUCGGUUUUaaguggaccccagucgucccccuccuccagggguuugccugggcuuaAAACUGAAAUGGUUUGUUACAG
((((.((((((.((((((((((((.....(((((.((..(((((.....)))))..)).))))))))))))))))).)))))).))))..

Structure

--    G      G            uggac     u  uc     c 
  GUAA AAAUCA UUCGGUUUUaag     cccag cg  ccccu c
  |||| |||||| ||||||||||||     ||||| ||  ||||| u
  CAUU UUUGGU AAGUCAAAauuc     ggguc gu  gggga c
GA    G      A            -----     c  uu     c

Annotation confidence Not enough data

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Genome context

KB455348.1: 97124-97213 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-255

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-255-5p

Accession	MIMAT0030760
Description	Panagrellus redivivus prd-miR-255-5p mature miRNA
Sequence	1 - GUAAGAAAUCAGUUCGGUUUU - 21
Evidence	experimental Illumina [1]

Mature prd-miR-255-3p

Accession	MIMAT0030761
Description	Panagrellus redivivus prd-miR-255-3p mature miRNA
Sequence	69 - AAACUGAAAUGGUUUGUUACAG - 90
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295