miRBase entry: prd-mir-7939g

Stem-loop prd-mir-7939g

Accession

MI0025708

Description

Panagrellus redivivus prd-mir-7939g precursor miRNA

Sequence

UAUGGGCCCUCAUGGCAUUCUUGuuaucacuaaaaucaUGAAUGUUAUGAAGGUCCACGGC
..((((((.(((((((((((.((.............)).))))))))))).))))))....

Structure

--UA      C           U  uuauc 
    UGGGCC UCAUGGCAUUC UG     a
    |||||| ||||||||||| ||     c
    ACCUGG AGUAUUGUAAG ac     u
CGGC      A           U  uaaaa

Annotation confidence Not enough data

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Genome context

KB454973.1: 59150-59210 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7939g

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7939g-5p

Accession	MIMAT0030772
Description	Panagrellus redivivus prd-miR-7939g-5p mature miRNA
Sequence	1 - UAUGGGCCCUCAUGGCAUUCUUG - 23
Evidence	experimental Illumina [1]

Mature prd-miR-7939g-3p

Accession	MIMAT0030773
Description	Panagrellus redivivus prd-miR-7939g-3p mature miRNA
Sequence	39 - UGAAUGUUAUGAAGGUCCACGGC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295