miRBase entry: prd-mir-44

Stem-loop prd-mir-44

Accession

MI0025714

Description

Panagrellus redivivus prd-mir-44 precursor miRNA

Sequence

CUGGAUGUGUCAUCACGUCcauguaaccguuccaucaUGACUAGAUGAUCACAUUCAGC
((((((((((((((..(((.(((............))))))..))))).))))))))).

Structure

-         -     AC   c   uaacc 
 CUGGAUGUG UCAUC  GUC aug     g
 ||||||||| |||||  ||| |||      
 GACUUACAC AGUAG  CAG Uac     u
C         U     AU   -   uaccu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KB455309.1: 32637-32695 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from prd-mir-44

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-44-5p

Accession	MIMAT0030784
Description	Panagrellus redivivus prd-miR-44-5p mature miRNA
Sequence	1 - CUGGAUGUGUCAUCACGUC - 19
Evidence	experimental Illumina [1]

Mature prd-miR-44-3p

Accession	MIMAT0030785
Description	Panagrellus redivivus prd-miR-44-3p mature miRNA
Sequence	38 - UGACUAGAUGAUCACAUUCAGC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295