miRBase entry: prd-mir-7939a

Stem-loop prd-mir-7939a

Accession

MI0025725

Description

Panagrellus redivivus prd-mir-7939a precursor miRNA

Sequence

CAUGAGCCCUCAUGGCAUUCAUGuuaucauucaaaucaUGAAUGUUCUGGAGGCCCGUGGC
((((.(((.(((.((((((((((.............)))))))))).))).))).))))..

Structure

--    A   C   U          uuauc 
  CAUG GCC UCA GGCAUUCAUG     a
  |||| ||| ||| ||||||||||     u
  GUGC CGG GGU UUGUAAGUac     u
CG    C   A   C          uaaac

Annotation confidence Not enough data

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Genome context

KB455345.1: 202148-202208 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7939a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7939a-5p

Accession	MIMAT0030806
Description	Panagrellus redivivus prd-miR-7939a-5p mature miRNA
Sequence	1 - CAUGAGCCCUCAUGGCAUUCAUG - 23
Evidence	experimental Illumina [1]

Mature prd-miR-7939a-3p

Accession	MIMAT0030807
Description	Panagrellus redivivus prd-miR-7939a-3p mature miRNA
Sequence	39 - UGAAUGUUCUGGAGGCCCGUGGC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295