miRBase entry: prd-mir-39

Stem-loop prd-mir-39

Accession

MI0025728

Description

Panagrellus redivivus prd-mir-39 precursor miRNA

Sequence

GUGGAUGUCUUCCACGGUAAAUgauaaccgcuuucauUCACCGGGAACUCAUUCAUGC
(((((((..((((.((((.(((((.........))))).))))))))..)))))))..

Structure

--       UC    A    A     uaa 
  GUGGAUG  UUCC CGGU AAUga   c
  |||||||  |||| |||| |||||   c
  UACUUAC  AAGG GCCA Uuacu   g
CG       UC    -    C     uuc

Annotation confidence Not enough data

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Genome context

KB455309.1: 33005-33062 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from prd-mir-39

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-39-5p

Accession	MIMAT0030812
Description	Panagrellus redivivus prd-miR-39-5p mature miRNA
Sequence	1 - GUGGAUGUCUUCCACGGUAAAU - 22
Evidence	experimental Illumina [1]

Mature prd-miR-39-3p

Accession	MIMAT0030813
Description	Panagrellus redivivus prd-miR-39-3p mature miRNA
Sequence	38 - UCACCGGGAACUCAUUCAUGC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295