Stem-loop prd-mir-7963

Accession

MI0025736

Description

Panagrellus redivivus prd-mir-7963 precursor miRNA

Sequence

GCUAUGUAUCAAGCAAUGCUAuugaugaaaaauaAUAUUGCUACAUACAUAGGGU
.((((((((..(((((((.((((.......)))).)))))))..))))))))...

Structure

--G        CA       C    ga 
   CUAUGUAU  AGCAAUG UAuu  u
   ||||||||  ||||||| ||||  g
   GAUACAUA  UCGUUAU auaa  a
UGG        CA       A    aa 

Annotation confidence Not enough data

Genome context

KB455499.1: 54341-54395 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from prd-mir-7963

Mature prd-miR-7963-5p

• Accession: MIMAT0030826
• Description: Panagrellus redivivus prd-miR-7963-5p mature miRNA
• Sequence: 1 - GCUAUGUAUCAAGCAAUGCUA - 21
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7963-3p

• Accession: MIMAT0030827
• Description: Panagrellus redivivus prd-miR-7963-3p mature miRNA
• Sequence: 35 - AUAUUGCUACAUACAUAGGGU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295