Stem-loop prd-mir-7966b

Accession

MI0025740

Description

Panagrellus redivivus prd-mir-7966b precursor miRNA

Sequence

CACGUUGAUGAUCCAACCUCAGCGuauucuuugcuuaucgcUGAGGUGCGACAUUCCGUGUA
((((..((((.((..(((((((((..............)))))))))..)))))).))))..

Structure

--    UU    A  CA         uauucu 
  CACG  GAUG UC  ACCUCAGCG      u
  ||||  |||| ||  |||||||||       
  GUGC  UUAC AG  UGGAGUcgc      u
AU    -C    -  CG         uauucg 

Annotation confidence Not enough data

Genome context

KB455323.1: 202619-202680 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7966b

Mature prd-miR-7966b-5p

• Accession: MIMAT0030834
• Description: Panagrellus redivivus prd-miR-7966b-5p mature miRNA
• Sequence: 1 - CACGUUGAUGAUCCAACCUCAGCG - 24
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7966b-3p

• Accession: MIMAT0030835
• Description: Panagrellus redivivus prd-miR-7966b-3p mature miRNA
• Sequence: 42 - UGAGGUGCGACAUUCCGUGUA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295