Stem-loop prd-mir-7971

Accession

MI0025745

Description

Panagrellus redivivus prd-mir-7971 precursor miRNA

Sequence

AGCGUUAAUUGAAGUUGUUCAACGuucuuuacccacagauuacgcaaaucugcuaccgUUGAACAACUAAUUAACGCUGC
((((((((((..((((((((((((...........((((((.....))))))....))))))))))))))))))))))..

Structure

--          GA            uucuuuaccca      a 
  AGCGUUAAUU  AGUUGUUCAACG           cagauu c
  ||||||||||  ||||||||||||           |||||| g
  UCGCAAUUAA  UCAACAAGUUgc           gucuaa c
CG          --            -------cauc      a 

Annotation confidence Not enough data

Genome context

KB455348.1: 102347-102426 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7971

Mature prd-miR-7971-5p

• Accession: MIMAT0030844
• Description: Panagrellus redivivus prd-miR-7971-5p mature miRNA
• Sequence: 1 - AGCGUUAAUUGAAGUUGUUCAACG - 24
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7971-3p

• Accession: MIMAT0030845
• Description: Panagrellus redivivus prd-miR-7971-3p mature miRNA
• Sequence: 59 - UUGAACAACUAAUUAACGCUGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295