Stem-loop stu-MIR7981

Accession

MI0025757

Description

Solanum tuberosum stu-MIR7981 precursor miRNA

Sequence

13214 reads, 382.0 reads per million, 83 experiments

guuaauuaaacuaugguccuauuacccccucaaauccauuuuuuuuguaauuuuauacaccuuuuugacUUACGUGGCAUCCAAACAUCUuccaugugccucaacuauguggaaucauggagugugccacguaagucaaaagguguauaaaauuccaaaaaaaaaaaaagaguuugaagagguaAUAGGACUUUAGUUUAGUUAAGGU
.((((((((((((.((((((((((((.(.((((((.(.(((((((((.(((((((((((((((((.((((((((((((((.(...(((.(((((((((.......)))))))))..)))..).))))))))))))))))))))))))))))))).))))))))).....).)))))).).)))))))))))).))))))))))))...

Structure

--g            u            c c      c ----a         u                 u              C AAA   -C         cc 
   uuaauuaaacua gguccuauuacc c ucaaau c     uuuuuuuug aauuuuauacaccuuuu gacUUACGUGGCAU C   CAU  Uuccaugug  u
   |||||||||||| |||||||||||| | |||||| |     ||||||||| ||||||||||||||||| |||||||||||||| |   |||  |||||||||  c
   AAUUGAUUUGAU UCAGGAUAaugg g aguuug g     aaaaaaaac uuaaaauauguggaaaa cugaaugcaccgug g   gua  aagguguau  a
UGG            U            a a      a aaaaa         c                 -              u -ag   cu         ca 

Annotation confidence Low

Genome context

JH138445.1: 138080-138287 [+]

Mature stu-miR7981-5p

• Accession: MIMAT0031182
• Description: Solanum tuberosum stu-miR7981-5p mature miRNA
• Sequence: 70 - UUACGUGGCAUCCAAACAUCU - 90
• Evidence: experimental ; Illumina [1]

Mature stu-miR7981-3p

• Accession: MIMAT0030848
• Description: Solanum tuberosum stu-miR7981-3p mature miRNA
• Sequence: 185 - AUAGGACUUUAGUUUAGUUAAGGU - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233