Stem-loop stu-MIR7984a

Accession

MI0025761

Description

Solanum tuberosum stu-MIR7984a precursor miRNA

Literature search

1 open access papers mention stu-MIR7984a
(1 sentences)

Sequence

12974 reads, 471.0 reads per million, 83 experiments

AUACCGAACUUUGGAAAUGACCUUuuaccccccugcacuauuuaauaguguauuuuaaagguauauaugugcccacguggacaucauaaauauugcaucauuuuaaauaguaauguguccgcaugggcacauauauaccuuuacaauacacuaucaaauagugcagaggauaaaagauuuUCCAUAAAGUUUGGUAUCG
(((((((((((((((((....((((((..((.(((((((((((.((((((((((.((((((((((((((((((((.(((((((.(((...((((...........))))...)))))))))).)))))))))))))))))))).)))))))))).))))))))))).)).))))))..))))))..)))))))))))..

Structure

--           --      UGAC      cc  c           a          u                    c       u   aaa    gcau 
  AUACCGAACUU  UGGAAA    CUUuua  cc cugcacuauuu auaguguauu uaaagguauauaugugccca guggaca cau   uauu    c
  |||||||||||  ||||||    ||||||  || ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||   ||||    a
  UAUGGUUUGAA  ACCUuu    gaaaau  gg gacgugauaaa uaucacauaa auuuccauauauacacgggu cgccugu gua   auaa    u
GC           AU      --ua      -a  a           c          c                    a       -   aug    auuu 

Annotation confidence Medium

Genome context

JH137928.1: 1282894-1283092 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR7984a

Mature stu-miR7984a-5p

• Accession: MIMAT0030852
• Description: Solanum tuberosum stu-miR7984a-5p mature miRNA
• Sequence: 1 - AUACCGAACUUUGGAAAUGACCUU - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR7984a-3p

• Accession: MIMAT0058184
• Description: Solanum tuberosum stu-miR7984a-3p mature miRNA
• Sequence: 181 - UCCAUAAAGUUUGGUAUCG - 199
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233