Stem-loop stu-MIR7984b

Accession

MI0025762

Description

Solanum tuberosum stu-MIR7984b precursor miRNA

Literature search

1 open access papers mention stu-MIR7984b
(1 sentences)

Sequence

10442 reads, 340.0 reads per million, 83 experiments

auaccgaacuuuggaaaugaccuuuuaccccugcacuauuuaauaguuAUUUUAAAGGUAUAUAUGUGCccagguggacaucauaaaaauugcaucauuauaaauaguaacgugucuacgugagcaaauAUAUACCUUUAAAAUACACUAUUaaauaguguagggguaaaaggucuuucauaaaauuugguaucg
((((((((.((((((((.(((((((((((((((((((((((((((((((((((((((((((((((.(((.((.((((((((..............................)))))))).)).))).)))))))))))))))))).))))))))))))))))))))))))))))))))).)))).))))))))..

Structure

--        c    -    u                             -                  G   c  g        cauaaaaauugcau 
  auaccgaa uuug gaaa gaccuuuuaccccugcacuauuuaauagu uAUUUUAAAGGUAUAUAU UGC ca guggacau              c
  |||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||               
  uaugguuu aaau cuuu cuggaaaauggggaugugauaaaUUAUCA AUAAAAUUUCCAUAUAua acg gu caucugug              a
gc        a    a    -                             C                  a   a  g        caaugauaaauauu 

Annotation confidence Low

Genome context

JH138511.1: 123046-123240 [-]

Mature stu-miR7984b-5p

• Accession: MIMAT0030853
• Description: Solanum tuberosum stu-miR7984b-5p mature miRNA
• Sequence: 49 - AUUUUAAAGGUAUAUAUGUGC - 69
• Evidence: experimental ; Illumina [1]

Mature stu-miR7984b-3p

• Accession: MIMAT0031184
• Description: Solanum tuberosum stu-miR7984b-3p mature miRNA
• Sequence: 130 - AUAUACCUUUAAAAUACACUAUU - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233